msg191197 - (view) |
Author: Mikhail Traskin (mtraskin) * |
Date: 2013-06-15 05:12 |
_dict_to_list method of the csv.DictWriter objects created with extrasaction="raise" uses look-up in the list of field names to check if current row has any unknown fields. This results in O(n^2) execution time and is very slow if there are a lot of columns in a CSV file (in hundreds or thousands). Replacing look-up in a list with a look-up in a set solves the issue (see the attached patch).
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msg191198 - (view) |
Author: Serhiy Storchaka (serhiy.storchaka) * |
Date: 2013-06-15 05:52 |
I think there is no need in public fieldset property. Just use private self._fieldset field in private _dict_to_list() method.
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msg191263 - (view) |
Author: Mikhail Traskin (mtraskin) * |
Date: 2013-06-16 06:19 |
Any way is fine with me. If you prefer to avoid having public filedset property, please use the attached patch.
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msg191604 - (view) |
Author: Terry J. Reedy (terry.reedy) * |
Date: 2013-06-21 19:05 |
What is the purpose in touching fieldnames, either in tuple-izing it or in making it private and wrapped with a property. If someone wants to modify it, that is up to them. In any case, this change is not germane to the issue and could break code, so I would not make it.
wrong_fields could be calculated with
any(k for k in rowdict if k not in self._fieldset)
to stop on the first extra, if any.
That said, in 3.x, replacing
wrong_fields = <long expression>
if wrong_fields:
with
if rowdict.keys() - self._fieldset:
should be even faster because the iteration, which will nearly always go to completion, is entirely in C (or whatever).
Does test/text_cvs have tests for DictWriter, both with and without rowdict errors? If so, or if added, I would be willing to commit a patch that simply added ._fieldset and used it as above for a set difference.
Also, if you have not done so yet, please go to
http://www.python.org/psf/contrib/ and
http://www.python.org/psf/contrib/contrib-form/ new electronic form
and submit a contributor agreement. An '*' will appear after your name here when it is processed.
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msg195233 - (view) |
Author: Mikhail Traskin (mtraskin) * |
Date: 2013-08-15 05:23 |
> What is the purpose in touching fieldnames [...]
Wrapping the fieldnames property and tupleizing it guarantees that fieldnames and _fieldset fields are consistent.
Otherwise, having a separate _fieldset field means that someone who is modifying the fieldnames field will not modify the _fieldset. This will result in inconsistent DictWriter behavior. Normal DictWriter users (ones that do not modify fieldnames after DictWriter was created) will not notice this wrapper. "Non-normal" DictWriter will have their code broken, but it is better than having inconsistent internal data structures since these errors are very hard to detect. If you insist on keeping the interface intact, then use the attached v3 of the patch: it creates a fieldset object every time the _dict_to_list method is executed. This does slow execution down, but performance is acceptable, just about 1.5 time slower than version with _fieldset field.
> wrong_fields could be calculated with [...]
I believe it is better to report all wrong fields at ones. In addition this optimization is meaningless, since usually, unless something is wrong, the field check will require full scan of the rowdict.
> That said, in 3.x, replacing [...]
In 2.x the list comprehension version is faster than the set difference version. In 3.x the set difference is slightly faster (maybe 10% faster). However, list comprehension works both in 2.x and 3.x, while set difference requires different code for them. Hence I prefer sticking with list comprehension.
> Does test/text_cvs have tests [...]
No there are no tests for wrong fields. Correct fields are already checked with standard writing tests. I do not know how you write tests for exception handling. If you provide a link with instructions, I can write the missing test part.
> Also, if you have not done so yet, please go to [...]
I have already done this.
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msg195245 - (view) |
Author: Peter Otten (peter.otten) * |
Date: 2013-08-15 10:23 |
Note that set operations on dict views work with lists, too. So the only change necessary is to replace
wrong_fields = [k for k in rowdict if k not in self.fieldnames]
with
wrong_fields = rowdict.keys() - self.filenames
(A backport to 2.7 would need to replace keys() with viewkeys())
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msg196821 - (view) |
Author: Mikhail Traskin (mtraskin) * |
Date: 2013-09-03 03:30 |
Peter, thank you for letting me know that views work with list, I was not aware of this. This is indeed the best solution and it also keeps the DictWriter interface unchanged.
Terry, attached patch contains the DictWriter change and a test case in test_csv.py.
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msg279058 - (view) |
Author: Hugh Brown (hughdbrown) |
Date: 2016-10-20 17:25 |
I came across this problem today when I was using a 1000+ column CSV from a client. It was taking about 15 minutes to process each file. I found the problem and made this change:
# wrong_fields = [k for k in rowdict if k not in self.fieldnames]
wrong_fields = set(rowdict.keys()) - set(self.fieldnames)
And my processing time went down to 12 seconds per file -- a 75x speedup.
It's kind of sad that this change has been waiting for over three years when it is so simple. Any chance we could make one of the acceptable code changes and release it?
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msg279101 - (view) |
Author: Mariatta (Mariatta) * |
Date: 2016-10-21 03:15 |
Hello, please review my patch.
I used set subtraction to calculate wrong_fields, added more test cases, and clarify documentation with regards to extrasaction parameter.
Please let me know if this works.
Thanks :)
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msg279105 - (view) |
Author: Hugh Brown (hughdbrown) |
Date: 2016-10-21 03:27 |
Fabulous. Looks great. Let's ship!
It is not the *optimal* fix for 3.x platforms. A better fix would calculate the set of fieldnames only once in __init__ (or only as often as fieldnames is changed).
But I stress that it is a robust change that works in versions 2.7 through 3.x for sure. And it is *way* better than the alternative of searching a list.
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msg279107 - (view) |
Author: Mariatta (Mariatta) * |
Date: 2016-10-21 04:20 |
Thanks Hugh,
Are you thinking of something like the following?
class DictWriter:
def __init__(self, f, fieldnames, restval="", extrasaction="raise",
dialect="excel", *args, **kwds):
self._fieldnames = fieldnames # list of keys for the dict
self._fieldnames_set = set(self._fieldnames)
@property
def fieldnames(self):
return self._fieldnames
@fieldnames.setter
def fieldnames(self, value):
self._fieldnames = value
self._fieldnames_set = set(self._fieldnames)
def _dict_to_list(self, rowdict):
if self.extrasaction == "raise":
wrong_fields = rowdict.keys() - self._fieldnames_set
...
If so, I can work on another patch.
Thanks.
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msg279108 - (view) |
Author: Hugh Brown (hughdbrown) |
Date: 2016-10-21 04:24 |
Mariatta:
Yes, that is what I was thinking of.
That takes my 12 execution time down to 10 seconds. (Or, at least, a fix I did of this nature had that effect -- I have not timed your patch but it should be the same.)
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msg279109 - (view) |
Author: Mariatta (Mariatta) * |
Date: 2016-10-21 04:29 |
Thanks, Hugh.
Please check the updated patch :)
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msg279115 - (view) |
Author: Inada Naoki (methane) * |
Date: 2016-10-21 10:19 |
LGTM, Thanks Mariatta.
(But one more LGTM from coredev is required for commit)
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msg279116 - (view) |
Author: STINNER Victor (vstinner) * |
Date: 2016-10-21 10:22 |
issue18219v6.patch: LGTM, but I added a minor PEP 8 comment.
INADA Naoki: "LGTM, Thanks Mariatta. (But one more LGTM from coredev is required for commit)"
If you are confident (ex: if the change is simple, like this one), you can push it directly.
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msg279117 - (view) |
Author: Mariatta (Mariatta) * |
Date: 2016-10-21 10:28 |
Inada-san, Victor, thank you.
Here is the updated patch.
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msg279118 - (view) |
Author: Inada Naoki (methane) * |
Date: 2016-10-21 10:37 |
> If you are confident (ex: if the change is simple, like this one), you can push it directly.
My mentor (Yury) prohibit it while I'm beginner.
And as you saw, I missed PEP 8 violation :)
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msg279119 - (view) |
Author: STINNER Victor (vstinner) * |
Date: 2016-10-21 10:45 |
> My mentor (Yury) prohibit it while I'm beginner.
Oh right, trust your mentor more than me ;-)
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msg279120 - (view) |
Author: Roundup Robot (python-dev) |
Date: 2016-10-21 10:53 |
New changeset 1928074e6519 by INADA Naoki in branch '3.6':
Issue #18219: Optimize csv.DictWriter for large number of columns.
https://hg.python.org/cpython/rev/1928074e6519
New changeset 6f1602dfa4d5 by INADA Naoki in branch 'default':
Issue #18219: Optimize csv.DictWriter for large number of columns.
https://hg.python.org/cpython/rev/6f1602dfa4d5
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msg279121 - (view) |
Author: Inada Naoki (methane) * |
Date: 2016-10-21 10:54 |
committed.
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msg279124 - (view) |
Author: Serhiy Storchaka (serhiy.storchaka) * |
Date: 2016-10-21 13:13 |
Shouldn't docs changes and new tests be added to 3.5?
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msg279128 - (view) |
Author: R. David Murray (r.david.murray) * |
Date: 2016-10-21 14:01 |
Serhiy: I know you prefer applying test changes to the maint version, and I don't disagree, but there are others who prefer not to and we really don't have an official policy on it at this point. (We used to say no, a few years ago :)
The doc change looks wrong to me. It looks like a rst source paragraph was split into separate lines instead of being a flowed paragraph in the source? I don't understand why that was done.
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msg279129 - (view) |
Author: Mariatta (Mariatta) * |
Date: 2016-10-21 14:15 |
Thanks David. I uploaded patch to address your concern with the docs.
Can you please check?
Serhiy, with regards to applying docs and test to 3.5, does that require a different patch than what I have?
Thanks.
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Date |
User |
Action |
Args |
2022-04-11 14:57:46 | admin | set | github: 62419 |
2017-03-31 16:36:23 | dstufft | set | pull_requests:
+ pull_request969 |
2016-10-21 14:15:53 | Mariatta | set | files:
+ issue18219v9.patch
messages:
+ msg279129 |
2016-10-21 14:01:42 | r.david.murray | set | nosy:
+ r.david.murray messages:
+ msg279128
|
2016-10-21 13:13:08 | serhiy.storchaka | set | messages:
+ msg279124 |
2016-10-21 10:54:34 | methane | set | status: open -> closed resolution: fixed messages:
+ msg279121
stage: commit review -> resolved |
2016-10-21 10:53:41 | python-dev | set | nosy:
+ python-dev messages:
+ msg279120
|
2016-10-21 10:48:17 | Mariatta | set | files:
+ issue18219v8.patch |
2016-10-21 10:45:16 | vstinner | set | messages:
+ msg279119 |
2016-10-21 10:37:59 | methane | set | messages:
+ msg279118 |
2016-10-21 10:28:01 | Mariatta | set | files:
+ issue18219v7.patch
messages:
+ msg279117 |
2016-10-21 10:22:26 | vstinner | set | nosy:
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+ msg279116
|
2016-10-21 10:19:35 | methane | set | nosy:
+ methane
messages:
+ msg279115 versions:
- Python 3.5 |
2016-10-21 10:11:49 | Mariatta | set | files:
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2016-10-21 10:09:58 | Mariatta | set | files:
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2016-10-21 09:44:55 | Mariatta | set | files:
+ issue18219v4.patch |
2016-10-21 09:27:07 | Mariatta | set | files:
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2016-10-21 04:29:58 | Mariatta | set | files:
+ issue18219v2.patch
messages:
+ msg279109 |
2016-10-21 04:24:09 | hughdbrown | set | messages:
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2016-10-21 04:20:11 | Mariatta | set | messages:
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2016-10-21 03:27:23 | hughdbrown | set | messages:
+ msg279105 |
2016-10-21 03:15:19 | Mariatta | set | files:
+ issue18219.patch nosy:
+ Mariatta messages:
+ msg279101
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2016-10-20 18:05:29 | SilentGhost | set | stage: commit review versions:
+ Python 3.5, Python 3.6, Python 3.7, - Python 3.4 |
2016-10-20 17:25:36 | hughdbrown | set | nosy:
+ hughdbrown messages:
+ msg279058
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2013-09-03 03:30:23 | mtraskin | set | files:
+ csvdictwriter.v4.patch
messages:
+ msg196821 |
2013-08-15 10:23:17 | peter.otten | set | nosy:
+ peter.otten messages:
+ msg195245
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2013-08-15 05:23:29 | mtraskin | set | files:
+ csvdictwriter.v3.patch
messages:
+ msg195233 |
2013-06-21 19:05:40 | terry.reedy | set | nosy:
+ terry.reedy
messages:
+ msg191604 versions:
+ Python 3.4 |
2013-06-16 06:19:13 | mtraskin | set | files:
+ csvdictwriter.v2.patch
messages:
+ msg191263 |
2013-06-15 05:52:23 | serhiy.storchaka | set | nosy:
+ serhiy.storchaka messages:
+ msg191198
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2013-06-15 05:12:39 | mtraskin | create | |