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Patch for better thread support in hashlib #49001

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ebfe mannequin opened this issue Dec 26, 2008 · 49 comments
Closed

Patch for better thread support in hashlib #49001

ebfe mannequin opened this issue Dec 26, 2008 · 49 comments
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extension-modules C modules in the Modules dir performance Performance or resource usage

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@ebfe
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ebfe mannequin commented Dec 26, 2008

BPO 4751
Nosy @gpshead, @pitrou, @vstinner
Files
  • md5sum.py
  • hashlibtest.py
  • hashlibtest2.py
  • hashlibopenssl_small_lock-5.diff
  • hashlibopenssl_gil_py27_2.diff
  • Note: these values reflect the state of the issue at the time it was migrated and might not reflect the current state.

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    GitHub fields:

    assignee = 'https://github.com/gpshead'
    closed_at = <Date 2009-05-04.00:24:51.831>
    created_at = <Date 2008-12-26.13:39:10.113>
    labels = ['extension-modules', 'performance']
    title = 'Patch for better thread support in hashlib'
    updated_at = <Date 2009-05-04.00:24:51.830>
    user = 'https://bugs.python.org/ebfe'

    bugs.python.org fields:

    activity = <Date 2009-05-04.00:24:51.830>
    actor = 'gregory.p.smith'
    assignee = 'gregory.p.smith'
    closed = True
    closed_date = <Date 2009-05-04.00:24:51.831>
    closer = 'gregory.p.smith'
    components = ['Extension Modules']
    creation = <Date 2008-12-26.13:39:10.113>
    creator = 'ebfe'
    dependencies = []
    files = ['12464', '12465', '12534', '12620', '13646']
    hgrepos = []
    issue_num = 4751
    keywords = ['patch']
    message_count = 49.0
    messages = ['78297', '78308', '78309', '78311', '78312', '78317', '78322', '78323', '78325', '78327', '78328', '78330', '78665', '78719', '78734', '78773', '78774', '78775', '78801', '78820', '78857', '78858', '78896', '78905', '78909', '78913', '78916', '78924', '78927', '78952', '78976', '78979', '79087', '79274', '79275', '79276', '79280', '79438', '79439', '79440', '79441', '79446', '81729', '81742', '81765', '81809', '81825', '85713', '87091']
    nosy_count = 6.0
    nosy_names = ['collinwinter', 'gregory.p.smith', 'pitrou', 'vstinner', 'jyasskin', 'ebfe']
    pr_nums = []
    priority = 'normal'
    resolution = 'accepted'
    stage = 'resolved'
    status = 'closed'
    superseder = None
    type = 'performance'
    url = 'https://bugs.python.org/issue4751'
    versions = ['Python 2.7']

    @ebfe
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    ebfe mannequin commented Dec 26, 2008

    The hashlib functions provided by _hashopenssl.c hold the GIL all the
    time although the underlying openssl-library is basically thread-safe.
    I've attached a patch (svn diff) which basically does four things:

    • If python is compiled with thread-support, the EVPobject is extended
      by an additional PyThread_type_lock which protects the objects individually.
    • The 'update' function releases the GIL if the to-be-hashed object is a
      Bytes-object and therefor provides trustworthy locking (all other types,
      including subclasses, are not trustworthy!). This allows multiple
      threads to do hashing in parallel.
    • The EVP_hash function removes duplicated code.
    • The situation regarding unicode objects is now more meaningful. Upon
      passing a unicode-string to the .update() function, the original hashlib
      throws a "TypeError: object supporting the buffer API required" which is
      confusing. I think it's perfectly valid not to accept unicode-strings as
      input and people should required to call str.encode() upon their strings
      before hashing, so a well-defined byte-representation of their strings
      get hashed. Therefor I patched the MY_GET_BUFFER_VIEW_OR_ERROUT-macro to
      throw "TypeError: Unicode-objects must be encoded before hashing". This
      also fixes issue bpo-1118

    I've tested this patch and did not run into problems. CPU occupancy
    relies on the buffer-size passed to .update() as releasing the GIL is
    basically not worth the effort for very small buffers. More testing may
    be needed...

    @ebfe ebfe mannequin added stdlib Python modules in the Lib dir performance Performance or resource usage labels Dec 26, 2008
    @vstinner
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    I think that you don't use Py_BEGIN_ALLOW_THREADS /
    Py_END_ALLOW_THREADS correctly: the GIL can be released when the
    hashlib lock is acquired (to run hash functions in parallel threads).
    So the macros should be:

    #define ENTER_HASHLIB \
       PyThread_acquire_lock(self->lock, 1); \
       Py_BEGIN_ALLOW_THREADS
    
    #define LEAVE_HASHLIB \
       Py_END_ALLOW_THREADS \
       PyThread_release_lock(self->lock);

    If I'm right, issue bpo-4738 (zlib) is also affected.

    @pitrou
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    pitrou commented Dec 26, 2008

    Hi,

    Very good idea. However, you don't need to discriminate for the bytes
    type specifically. When a buffer is taken on the object (with
    PyObject_GetBuffer()), the object is internally "locked" until the
    buffer is release with PyBuffer_Release(). Try with a bytearray and
    you'll see: if you resize the bytearray while hashing it in another
    thread, you'll get a BufferError exception.

    All in all, it should make your code and macros much simpler.

    @vstinner
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    EVP_copy() and EVP_get_digest_size() should call
    ENTER_HASHLIB/LEAVE_HASHLIB to protect self->ctx.

    @vstinner
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    If view.len is negative, EVP_hash() may read invalid memory :-/ Be
    careful of integer overflow in this block:

       Py_ssize_t offset = 0, sublen = len;
       while (sublen) {
          unsigned int process = sublen > MUNCH_SIZE ? MUNCH_SIZE : 
    sublen;
          ...
       }

    You removed Py_SAFE_DOWNCAST(len, Py_ssize_t, unsigned int) which
    should be used (eg. on process?).

    Note: you might modify len directly instead of using a second variable
    (sublen), and cp instead of using an offset.

    @vstinner
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    New version of ebfe's patch:

    • ENTER/LEAVE_HASHLIB:
      • don't touch GIL in ENTER_HASHLIB (it's useless)
      • add mandatory argument (explicit use of "self")
    • EVP_hash():
      • restore Py_SAFE_DOWNCAST
      • simplify the code: always use the while() instead of if+while
      • use "while (0 < len)" to skip zero or negative value (even if
        pitrou told me that len should not be negative)
    • EVP_dealloc(): free the lock before the context
    • release the GIL for all calls to EVP_hash()
    • use the context lock in EVP_copy() and EVP_get_digest_size() to
      protect self
    • don't use the context lock in EVP_repr() (useless because we don't
      read OpenSSL context)
    • fix the indentation of the code (replace tab by spaces)

    Some rules for ENTER/LEAVE_HASHLIB:

    • it is only needed to protect the context attribute (eg. name
      doesn't need to be protected by the lock)
    • it doesn't touch the GIL: use an explicit call to
      Py_BEGIN_ALLOW_THREADS/Py_END_ALLOW_THREADS

    About the GIL:

    • EVP_DigestInit() and EVP_MD_CTX_copy() are consired fast enough to
      no release the GIL
    • The GIL is released for the slowest function: EVP_DigestUpdate()
      (called in our EVP_hash() function)

    @ebfe
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    ebfe mannequin commented Dec 27, 2008

    Thanks for the advices.

    Antoine, maybe you could clarify the situation regarding buffer-locks
    for me. In older versions of PEP-3118 the PyBUF_LOCK flag was still
    present but it doesn't seem to have made it's way into the final draft.
    Is it save to assume that a buffer-view will not change until release()
    is called - for all types supporting the buffer protocol in py3k ??

    I've done some testing and the overhead of releasing and re-locking the
    GIL is definitely a performance problem when trying to hash many small
    strings (doubled runtime for 100.000 times b'abc'). I've taken on
    haypo's patch to release the GIL only when the buffer is larger than 10kb.

    @pitrou
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    pitrou commented Dec 27, 2008

    Is it save to assume that a buffer-view will not change until release()
    is called - for all types supporting the buffer protocol in py3k ??

    Yes, it is!

    @vstinner
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    I've taken on haypo's patch to release the GIL only
    when the buffer is larger than 10kb

    You can factorize the code by moving Py_BEGIN_ALLOW_THREADS /
    Py_END_ALLOW_THREADS *into* EVP_hash ;-)

    10 KB is a random value or the fast value for your computer?

    I wrote a small benchmark: md5sum.py, my Python multithreaded version
    of md5sum. Results on 129 files (between 7 and 10 MB) on an Intel Quad
    Core @ 2.5 GHz:

    • without the patch: best=10.6 sec / average ~= 11.5 sec
    • with the patch (version 3): best=7.7 sec / average ~= 8.5 sec

    My program creates N threads for N files, which is maybe stupid (eg.
    limit to C+1 thread for C cores).

    @vstinner
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    New version of my md5sum.py program limited to 10 threads. New
    benchmark with 160 files (size in 7..10 MB):

    • Python unpatched: best=4.8 sec
    • C version (/usr/bin/md5sum): best=3.6 sec
    • Python patched: best=2.1 sec

    As everybody knows, Python is faster than the C language ;-) And the
    patch is really useful (the program is more than twice faster with 4
    cores).

    @ebfe
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    ebfe mannequin commented Dec 27, 2008

    Here is another simple benchmarker. For me it shows almost perfect
    scaling (2 cores = 196% performance) if the buffer put into .update() is
    large enough.

    I deliberately did not move Py_BEGIN_ALLOW_THREADS into EVP_hash as we
    might call this function without having some lock on the input buffer.

    The 10kb limit was based on my own computer (MacBook Pro 2x2.5GHz) and
    is somewhat more-safe-than-sorry.
    Hashing is *very* fast on modern CPUs and working on many small strings
    becomes very inefficient when releasing the GIL all the time. Just try
    to hash 10240 bytes vs. 10241 bytes.

    @vstinner
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    hashlibtest.py results on my Quad Core with 4 threads:

    • unpatched: best=13.0 sec
    • patched: best=3.25 sec

    Some maths: 13.0 / 4 = 3.25 \o/

    @pitrou
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    pitrou commented Dec 31, 2008

    Based on quick testing on my computer, we could probably put the limit
    as low as 1KB. But it may be that locks are cheap under Linux.
    In any case, the patch looks good, but I'm no OpenSSL expert.

    @vstinner
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    vstinner commented Jan 1, 2009

    Ooooh, I suggested to ebfe to remove the GIL unlock/lock, but I was 
    wrong :-( I hate locks! What is the right fix? Replace
       ENTER_HASHLIB(self)
       Py_BEGIN_ALLOW_THREADS
       ...
       Py_END_ALLOW_THREADS
       LEAVE_HASHLIB(self)
    by
       Py_BEGIN_ALLOW_THREADS
       ENTER_HASHLIB(self)
       ...
       LEAVE_HASHLIB(self)
       Py_END_ALLOW_THREADS
    ?

    @pitrou
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    pitrou commented Jan 1, 2009

    The right fix would probably be to define ENTER_HASHLIB(self) as
    	Py_BEGIN_ALLOW_THREADS
    	PyThread_acquire_lock(self->lock)
    	Py_END_ALLOW_THREADS

    @ebfe
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    ebfe mannequin commented Jan 2, 2009

    Releasing the GIL is somewhat expensive and should be avoided if
    possible. I've moved LEAVE_HASHLIB in EVP_update so the object gets
    unlocked before we call Py_END_ALLOW_THREADS. This is *only* possible
    because EVP_update does not use the object beyond those lines.

    Here is a new patch and a small test-script.

    @ebfe
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    ebfe mannequin commented Jan 2, 2009

    test-script

    @ebfe
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    ebfe mannequin commented Jan 2, 2009

    gnarf, actually it should be 'threads.append(Hasher(md))' in the script :-\

    @vstinner
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    vstinner commented Jan 2, 2009

    Releasing the GIL is somewhat expensive and should be avoided
    if possible.

    Another possible solution is to create a lockless object by default,
    and create a lock if the data size is bigger than N (eg. 8 KB). When
    the lock is created, update will always use the lock (and so the GIL).

    In general, you have two classes of hashlib usages:

    • hash a big files by chunk of k KB (eg. 256 KB)
    • hash a very small string (eg. 8 bytes)

    When you have a small string, you don't need to release the GIL nor to
    use locks. Whereas for a file, you can always release the GIL (and so
    you need a lock to protect the context).

    @ebfe
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    ebfe mannequin commented Jan 2, 2009

    I don't think this is actually worth the trouble. You run into situation
    where one thread might decide that it needs a lock now with other
    threads being in the to-be-locked-area at that time.

    @vstinner
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    vstinner commented Jan 2, 2009

    New implementation of finer lock grain in _hashlibopenssl: only create
    the lock at the first update with more than 8 KB bytes. Object
    creation/deallocation is faster if we hash less than 8 KB.

    Changes between hashopenssl_threads-4.diff and my new patch: fix the
    deadlock in ENTER_HASHLIB() (for the GIL) without speed change
    (because we don't change the GIL state if we don't use a lock).

    Changes between py3k trunk and my new patch:

    • release the GIL with large byte string => faster with multiple CPUs
    • fix EVP_get_block_size() and EVP_get_digest_size(): the context was
      not protected by the lock!

    @vstinner
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    vstinner commented Jan 2, 2009

    Update small lock patch: replace all tabs by spaces! I forget a change 
    between Python trunk and my patch: there is also the error message for 
    Unicode object. Before:
       >>> import hashlib; hashlib.md5("abc")
       TypeError: object supporting the buffer API required
    after:
       >>> import hashlib; hashlib.md5("abc")
       TypeError: Unicode-objects must be encoded before hashing

    @gpshead
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    gpshead commented Jan 2, 2009

    First: thanks for doing this. I've had a patch sitting in my own
    sandbox to release the GIL while hashing for a while but I hadn't
    finished testing it. It looks pretty similar to what you've done so
    lets go with the patch being developed in this issue.

    Rather than making HASHLIB_GIL_MINSIZE a constant I suggest making it a
    property of the hash object so that it can be set by the user. Most
    users will be fine with the default but depending upon the application,
    platform and hash algorithm being used other values may make more sense.

    @ebfe
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    ebfe mannequin commented Jan 2, 2009

    I don't think so.

    The interface should stay simple - python has very few such magic knobs.
    People will optimize for their own box as you said - and that code will
    run worse on all the others...

    Besides, we've lived so long with single-threaded openssl. Let's make
    HASHLIB_GIL_MINSIZE such that there is no risk of additional overhead
    introduced by this patch and refer to it's current value in the
    hashlib-module's documentation.

    @ebfe
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    ebfe mannequin commented Jan 3, 2009

    haypo, the patch will not compile when WITH_THREADS is not defined. The
    'lock'-member in the object structure is not present without
    WITH_THREADS however the line 'if (self->lock == NULL && view.len >=
    HASHLIB_GIL_MINSIZE)' will always refer to it.

    @vstinner
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    vstinner commented Jan 3, 2009

    About HASHLIB_GIL_MINSIZE, I'm unable to mesure the overhead. I tried
    timeit with 8190 and 8200 but the results are *very* close. I'm
    running Linux, it's maybe different on other OS.

    @vstinner
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    vstinner commented Jan 3, 2009

    haypo, the patch will not compile when WITH_THREADS is not defined.

    Ooops, fixed (patch version 3).

    @ebfe
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    ebfe mannequin commented Jan 3, 2009

    Here is another patch, this time for the fallback-md5-module. I know
    that situations are rare where openssl is not present but threading is.
    However they might occur out there and the md5module needed some love
    anyway:

    • The MD5 class from the fallback module can now also use threads with
      'small locks'
    • The behaviour regarding unicode data input is now consistent as to
      what the openssl-driven classes do.
    • Some code cleanup.

    I might act on the sha modules as way the next days. sha256.c still
    accepts 's#'...

    I might a

    @vstinner
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    vstinner commented Jan 3, 2009

    ebfe> Here is another patch, this time for the fallback-md5-module

    Please open a separated issue for each module, this issue is already
    too long and complex ;-) And it would be easier to fix other modules
    when patches for hashlib will be accepted ;-)

    @ebfe
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    ebfe mannequin commented Jan 3, 2009

    Haypo, we can probably reduce overhead by defining ENTER_HASHLIB like this:

    #define ENTER_HASHLIB(obj) \
        if ((obj)->lock) { \
            if (!PyThread_acquire_lock((obj)->lock, 0)) { \
                Py_BEGIN_ALLOW_THREADS \
                PyThread_acquire_lock((obj)->lock, 1); \
                Py_END_ALLOW_THREADS \
            } \
        }

    @pitrou
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    pitrou commented Jan 3, 2009

    I'm not sure about the approach of dynamically allocating self->lock.
    Imagine you allocate this lock while another thread is between
    ENTER_HASHLIB and LEAVE_HASHLIB. What happens on LEAVE_HASHLIB? The
    thread tries to release a lock it hadn't acquired (because the lock was
    NULL at the time). Is it simply ignored?

    @ebfe
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    ebfe mannequin commented Jan 3, 2009

    The lock is created while having the GIL in EVP_update. No other
    function releases the GIL (besides the creator-function which does not
    need the local lock).

    Thereby no other thread can be in between ENTER and LEAVE while the lock
    is allocated.

    @ebfe
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    ebfe mannequin commented Jan 4, 2009

    I've modified haypo's patch as commented. The object's lock should be
    free 99.9% of the time so we try non-blocking first and can thereby skip
    releasing and re-locking the gil (to avoid a deadlock).

    @pitrou
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    pitrou commented Jan 6, 2009

    The patch looks fine to me, apart from one point: the return value of
    PyThread_allocate_lock() should be checked for NULL, and the error
    either propagated or cleared.

    (I'd also suggest lowering HASHLIB_GIL_MINSIZE to 2048 or 4196)

    Gregory, what's your take?

    @gpshead
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    gpshead commented Jan 6, 2009

    hashlibopenssl_small_lock-4.diff looks good to me.

    I also agree that HASHLIB_GIL_MINSIZE should be lowered to 2048.

    Commit it, and please backport it to trunk before closing this bug.

    @vstinner
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    vstinner commented Jan 6, 2009

    Updated patch:

    • change HASHLIB_GIL_MINSIZE to 2048 bytes
    • update hashlib documentation: add a note about the 2048 GIL limit
    • write a small test just for more sure that the GIL cases are tested
      (GIL released during object creation or on update)

    @ebfe
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    ebfe mannequin commented Jan 6, 2009

    PyThread_allocate_lock can fail without interference. object->lock will
    stay NULL and the GIL is simply not released.

    @pitrou
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    pitrou commented Jan 8, 2009

    There is still a potential problem.
    Figure the following:

    • thread A executes ENTER_HASHLIB while lock is NULL; therefore, thread
      A has released the GIL and doesn't hold any lock
    • thread B enters EVP_update with a large buffer (it can be there, since
      A doens't hold the GIL)
    • thread B allocates the lock, releases the GIL, and allocates the lock
    • thread A continues running and arrives at LEAVE_HASHLIB; there,
      self->lock is not NULL anymore, so it tries to release it; since it
      hasn't acquired it before, this may block forever (depending on the
      platform I assume)

    To remove this possibility, the macros should probably look like:

        #define ENTER_HASHLIB(obj) \
            { \
                int __lock_exists = ((obj)->lock) != NULL; \
                if (__lock_exists) { \
                    if (!PyThread_acquire_lock((obj)->lock, 0)) { \
                        Py_BEGIN_ALLOW_THREADS \
                        PyThread_acquire_lock((obj)->lock, 1); \
                        Py_END_ALLOW_THREADS \
                    } \
                }
    
        #define LEAVE_HASHLIB(obj) \
                if (__lock_exists) { \
                    PyThread_release_lock((obj)->lock); \
                } \
            }

    @pitrou
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    pitrou commented Jan 8, 2009

    Oops, nevermind what I said. The GIL isn't released if obj->lock isn't
    there.

    @pitrou
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    pitrou commented Jan 8, 2009

    Haypo's last patch is ok. If you want it to be in 2.7 too, however,
    you'll have to provide another patch (I won't do it myself).

    @pitrou
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    pitrou commented Jan 8, 2009

    Committed to py3k in r68411. Please tell me if you intend to do a patch
    for 2.7. Otherwise, you/I can close the issue.

    @ebfe
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    ebfe mannequin commented Jan 8, 2009

    I'll do a patch for 2.7

    @gpshead
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    gpshead commented Feb 12, 2009

    assigning to me so i don't lose track of making sure this happens for
    trunk.

    @gpshead gpshead added extension-modules C modules in the Modules dir and removed stdlib Python modules in the Lib dir labels Feb 12, 2009
    @gpshead gpshead self-assigned this Feb 12, 2009
    @vstinner
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    @ebfe: Did you wrote the patch (for python 2.7)? Are you still
    interrested to write the patch?

    @ebfe
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    ebfe mannequin commented Feb 12, 2009

    yes, I got lost on that one. I'll create a patch for 2.7 tonight.

    @ebfe
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    ebfe mannequin commented Feb 12, 2009

    Patch for 2.7

    @vstinner
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    @ebfe: Your patch is very close to r68411 (patch for py3k), and so it
    looks correct (I didn't test it).

    @ebfe
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    ebfe mannequin commented Apr 7, 2009

    bump

    hashlibopenssl_gil_py27.diff has not yet been applied to py27 and does
    not apply cleanly any more. Here is an updated version.

    @gpshead
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    gpshead commented May 4, 2009

    Committed with a couple refactorings in trunk r72267. I also added a
    test (basically checking for corruption that would occur if the locks
    weren't working).

    (I'll sort out any py3k vs trunk differences to make future change
    merges easier).

    @gpshead gpshead closed this as completed May 4, 2009
    @ezio-melotti ezio-melotti transferred this issue from another repository Apr 10, 2022
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