python -m gzip reads in chunks of 1024 bytes:

This hurts performance somewhat. Using io.DEFAULT_BUFFER_SIZE will improve it. Also 'io.DEFAULT_BUFFER_SIZE' is better than: 'ARBITRARY_NUMBER_WITH_NO_COMMENT_EXPLAINING_WHY'.

With 1024 blocks
Decompression:
$ hyperfine -r 10 -w 3 'cat ~/test/500000reads.fastq.gz | ./prefix/bin/python3 -m gzip -d > /dev/null'
Benchmark #1: cat ~/test/500000reads.fastq.gz | ./prefix/bin/python3 -m gzip -d > /dev/null
Time (mean ± σ): 926.9 ms ± 7.7 ms [User: 901.2 ms, System: 59.1 ms]
Range (min … max): 913.3 ms … 939.4 ms 10 runs

Compression:
$ hyperfine -r 10 -w 3 'cat ~/test/500000reads.fastq | ./prefix/bin/python3 -m gzip --fast > /dev/null'
Benchmark #1: cat ~/test/500000reads.fastq | ./prefix/bin/python3 -m gzip --fast > /dev/null
Time (mean ± σ): 2.514 s ± 0.030 s [User: 2.469 s, System: 0.125 s]
Range (min … max): 2.472 s … 2.563 s 10 runs

with io.DEFAULT_BUFFER_SIZE
Decompression:
$ hyperfine -r 10 -w 3 'cat ~/test/500000reads.fastq.gz | ./prefix/bin/python3 -m gzip -d > /dev/null'
Benchmark #1: cat ~/test/500000reads.fastq.gz | ./prefix/bin/python3 -m gzip -d > /dev/null
  Time (mean ± σ):     839.9 ms ±   7.3 ms    [User: 816.0 ms, System: 57.3 ms]
  Range (min … max):   830.1 ms … 851.3 ms    10 runs

Compression:
$ hyperfine -r 10 -w 3 'cat ~/test/500000reads.fastq | ./prefix/bin/python3 -m gzip --fast > /dev/null'
Benchmark #1: cat ~/test/500000reads.fastq | ./prefix/bin/python3 -m gzip --fast > /dev/null
Time (mean ± σ): 2.275 s ± 0.024 s [User: 2.247 s, System: 0.096 s]
Range (min … max): 2.254 s … 2.322 s 10 runs

Speedups:

• Decompression 840 / 927 = 0.906 ~= 9% reduction in runtime
• Compression 2.275 / 2.514 = 0.905 ~= 9% reduction in runtime.

It is not stellar, but it is a quite nice improvement for such a tiny change.

New changeset 7956ef8 by Ruben Vorderman in branch 'master':
bpo-43317: Use io.DEFAULT_BUFFER_SIZE instead of 1024 in gzip CLI (bpo-24645)
7956ef8