Issue 39739: Python crash every time opening pycharm, seems related to tensorflow

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classification

Title:	Python crash every time opening pycharm, seems related to tensorflow
Type:	crash	Stage:	resolved
Components:	macOS	Versions:	Python 3.7

process

Status:	closed	Resolution:	third party
Dependencies:		Superseder:
Assigned To:		Nosy List:	leo212121, mark.dickinson, ned.deily, ronaldoussoren
Priority:	normal	Keywords:

Created on 2020-02-24 16:25 by leo212121, last changed 2022-04-11 14:59 by admin. This issue is now closed.

Messages (3)
msg362597 - (view)	Author: nono (leo212121)	Date: 2020-02-24 16:30
Hey, Whenever I try to open project in Pycharm, it will update python interpreter before the python process crashes with a SIGABRT and I get a crash window from OSX. I use homebrew with the latest packages and python 3.7.6. Any help is appreciated. Here's the log: Process: Python [3240] Path: /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/Resources/Python.app/Contents/MacOS/Python Identifier: Python Version: 3.7.6 (3.7.6) Code Type: X86-64 (Native) Parent Process: Python [2877] Responsible: pycharm [2777] User ID: 501 Date/Time: 2020-02-23 20:43:10.553 -0500 OS Version: Mac OS X 10.15.3 (19D76) Report Version: 12 Time Awake Since Boot: 17000 seconds Time Since Wake: 1000 seconds System Integrity Protection: enabled Crashed Thread: 0 Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: /usr/local/lib/python3.7/site-packages/tensorflow_core/compiler/tf2xla/ops/_xla_ops.so crashed on child side of fork pre-exec Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff656707fa __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff6572dbc1 pthread_kill + 432 2 libsystem_c.dylib 0x00007fff655873a2 raise + 26 3 libsystem_platform.dylib 0x00007fff6572242d _sigtramp + 29 4 ??? 0x00007fff8f33a988 __c_locale + 1480 5 libsystem_c.dylib 0x00007fff655f7a1c abort + 120 6 libtensorflow_framework.2.dylib 0x0000000122394bec tensorflow::internal::LogMessageFatal::~LogMessageFatal() + 44 7 libtensorflow_framework.2.dylib 0x0000000122394c20 tensorflow::internal::LogMessageFatal::~LogMessageFatal() + 16 8 libtensorflow_framework.2.dylib 0x0000000121c0452a tensorflow::OpRegistry::Register(std::__1::function<tensorflow::Status (tensorflow::OpRegistrationData)> const&) + 186 9 libtensorflow_framework.2.dylib 0x0000000121c06280 tensorflow::register_op::OpDefBuilderReceiver::OpDefBuilderReceiver(tensorflow::register_op::OpDefBuilderWrapper<true> const&) + 128 10 _xla_ops.so 0x00000001304d6515 _GLOBAL__sub_I_xla_ops.cc + 757 11 dyld 0x000000010640e15d ImageLoaderMachO::doModInitFunctions(ImageLoader::LinkContext const&) + 539 12 dyld 0x000000010640e582 ImageLoaderMachO::doInitialization(ImageLoader::LinkContext const&) + 40 13 dyld 0x0000000106408dc7 ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, char const, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 493 14 dyld 0x0000000106406e58 ImageLoader::processInitializers(ImageLoader::LinkContext const&, unsigned int, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 188 15 dyld 0x0000000106406ef8 ImageLoader::runInitializers(ImageLoader::LinkContext const&, ImageLoader::InitializerTimingList&) + 82 16 dyld 0x00000001063f8f87 dyld::runInitializers(ImageLoader*) + 82 17 dyld 0x0000000106402ad7 dlopen_internal + 609 18 libdyld.dylib 0x00007fff65514a7f dlopen + 171 19 org.python.python 0x000000010399e759 _PyImport_FindSharedFuncptr + 301 20 org.python.python 0x000000010397d5c2 _PyImport_LoadDynamicModuleWithSpec + 495 21 org.python.python 0x000000010397d138 _imp_create_dynamic + 309 22 org.python.python 0x00000001038d2472 _PyMethodDef_RawFastCallDict + 549 23 org.python.python 0x00000001038d1a83 _PyCFunction_FastCallDict + 41 24 org.python.python 0x000000010396065a _PyEval_EvalFrameDefault + 7738 25 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 26 org.python.python 0x00000001038d1d88 _PyFunction_FastCallKeywords + 212 27 org.python.python 0x0000000103967321 call_function + 737 28 org.python.python 0x000000010396028f _PyEval_EvalFrameDefault + 6767 29 org.python.python 0x00000001038d2194 function_code_fastcall + 106 30 org.python.python 0x0000000103967321 call_function + 737 31 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 32 org.python.python 0x00000001038d2194 function_code_fastcall + 106 33 org.python.python 0x0000000103967321 call_function + 737 34 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 35 org.python.python 0x00000001038d2194 function_code_fastcall + 106 36 org.python.python 0x0000000103967321 call_function + 737 37 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 38 org.python.python 0x00000001038d2194 function_code_fastcall + 106 39 org.python.python 0x0000000103967321 call_function + 737 40 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 41 org.python.python 0x00000001038d2194 function_code_fastcall + 106 42 org.python.python 0x00000001038d3542 object_vacall + 267 43 org.python.python 0x00000001038d3641 _PyObject_CallMethodIdObjArgs + 168 44 org.python.python 0x000000010397c373 PyImport_ImportModuleLevelObject + 1490 45 org.python.python 0x000000010395b7c2 builtin___import__ + 122 46 org.python.python 0x00000001038d2865 _PyMethodDef_RawFastCallKeywords + 537 47 org.python.python 0x00000001038d1dc0 _PyCFunction_FastCallKeywords + 41 48 org.python.python 0x00000001039672b4 call_function + 628 49 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 50 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 51 org.python.python 0x00000001038d1a00 _PyFunction_FastCallDict + 444 52 org.python.python 0x0000000103960573 _PyEval_EvalFrameDefault + 7507 53 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 54 org.python.python 0x00000001038d1a00 _PyFunction_FastCallDict + 444 55 org.python.python 0x0000000103960573 _PyEval_EvalFrameDefault + 7507 56 org.python.python 0x00000001038d2194 function_code_fastcall + 106 57 org.python.python 0x0000000103967321 call_function + 737 58 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 59 org.python.python 0x00000001038d2194 function_code_fastcall + 106 60 org.python.python 0x0000000103967321 call_function + 737 61 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 62 org.python.python 0x00000001038d2194 function_code_fastcall + 106 63 org.python.python 0x0000000103967321 call_function + 737 64 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 65 org.python.python 0x00000001038d2194 function_code_fastcall + 106 66 org.python.python 0x00000001038d2b07 _PyObject_Call_Prepend + 131 67 org.python.python 0x000000010390fe96 slot_tp_init + 80 68 org.python.python 0x000000010390cbc2 type_call + 172 69 org.python.python 0x00000001038d1c36 _PyObject_FastCallKeywords + 358 70 org.python.python 0x000000010396731a call_function + 730 71 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 72 org.python.python 0x00000001038d2194 function_code_fastcall + 106 73 org.python.python 0x0000000103967321 call_function + 737 74 org.python.python 0x000000010396028f _PyEval_EvalFrameDefault + 6767 75 org.python.python 0x00000001038d2194 function_code_fastcall + 106 76 org.python.python 0x0000000103967321 call_function + 737 77 org.python.python 0x000000010396028f _PyEval_EvalFrameDefault + 6767 78 org.python.python 0x00000001038d2194 function_code_fastcall + 106 79 org.python.python 0x0000000103967321 call_function + 737 80 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 81 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 82 org.python.python 0x00000001038d1d88 _PyFunction_FastCallKeywords + 212 83 org.python.python 0x0000000103967321 call_function + 737 84 org.python.python 0x00000001039603d2 _PyEval_EvalFrameDefault + 7090 85 org.python.python 0x00000001038d2194 function_code_fastcall + 106 86 org.python.python 0x0000000103967321 call_function + 737 87 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 88 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 89 org.python.python 0x00000001038d1d88 _PyFunction_FastCallKeywords + 212 90 org.python.python 0x0000000103967321 call_function + 737 91 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 92 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 93 org.python.python 0x00000001038d1d88 _PyFunction_FastCallKeywords + 212 94 org.python.python 0x0000000103967321 call_function + 737 95 org.python.python 0x00000001039603d2 _PyEval_EvalFrameDefault + 7090 96 org.python.python 0x00000001038d2194 function_code_fastcall + 106 97 org.python.python 0x0000000103967321 call_function + 737 98 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 99 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 100 org.python.python 0x000000010395e77d PyEval_EvalCode + 51 101 org.python.python 0x000000010398cbc4 run_mod + 54 102 org.python.python 0x000000010398bbf7 PyRun_FileExFlags + 160 103 org.python.python 0x000000010398b2ae PyRun_SimpleFileExFlags + 270 104 org.python.python 0x00000001039a3abe pymain_main + 5445 105 org.python.python 0x00000001039a412c _Py_UnixMain + 56 106 libdyld.dylib 0x00007fff655297fd start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff6566cce6 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6572e185 _pthread_cond_wait + 701 2 libopenblasp-r0.3.7.dylib 0x000000012a3c4c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff6572de65 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6572983b thread_start + 15 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000001064bcdc0 rcx: 0x00007ffeec346ca8 rdx: 0x0000000000000000 rdi: 0x0000000000000303 rsi: 0x0000000000000006 rbp: 0x00007ffeec346cd0 rsp: 0x00007ffeec346ca8 r8: 0x0000000000000003 r9: 0xcccccccccccccccd r10: 0x00000001064bcdc0 r11: 0x0000000000000246 r12: 0x0000000000000303 r13: 0x0000000000000000 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff656707fa rfl: 0x0000000000000246 cr2: 0x000000012166e7c0 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x1038b0000 - 0x1038b1fff +org.python.python (3.7.6 - 3.7.6) <6948AAF1-D45E-3D9B-A895-03C843B1075D> /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/Resources/Python.app/Contents/MacOS/Python 0x1038b8000 - 0x103a3bfff +org.python.python (3.7.6, [c] 2001-2019 Python Software Foundation. - 3.7.6) <25063A20-3D71-340D-81F1-96384E0857DA> /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/Python 0x103c0d000 - 0x103c0efff +lapack_lite.cpython-37m-darwin.so (0) <C3AA6C88-9EDB-3D5E-A9FA-7C9AF4ECFE3E> /usr/local/lib/python3.7/site-packages/numpy/linalg/lapack_lite.cpython-37m-darwin.so 0x103c12000 - 0x103c12ff3 +_api_implementation.cpython-37m-darwin.so (0) <7DC68089-9C56-379B-81BB-57226E73C395> /usr/local/lib/python3.7/site-packages/google/protobuf/internal/_api_implementation.cpython-37m-darwin.so 0x103c17000 - 0x103c18fff +termios.cpython-37m-darwin.so (0) <9808B153-1946-3BF9-B7D0-D38D95836A03> /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/termios.cpython-37m-darwin.so 0x103c1c000 - 0x103c1cfff +_uuid.cpython-37m-darwin.so (0) <49D01DE5-A3E3-3F6E-AB2A-54C1783B7B1C> 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/usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/select.cpython-37m-darwin.so 0x104498000 - 0x10449dffb +array.cpython-37m-darwin.so (0) <BA5C73BF-CED7-393A-8A48-333776936008> /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/array.cpython-37m-darwin.so 0x1044a5000 - 0x1044a5fff +_bisect.cpython-37m-darwin.so (0) <7C7230DF-C9CD-39F3-862E-DA9AFFEC69AE> /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bisect.cpython-37m-darwin.so 0x1044a9000 - 0x1044aaffb +_random.cpython-37m-darwin.so (0) <3A53714A-1DEA-3F95-BE47-7933AC3AF60E> /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so 0x1044ae000 - 0x1044afffb +_multiprocessing.cpython-37m-darwin.so (0) <DA5DB622-3D54-3003-8A54-A4F6C9146108> 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msg362600 - (view)	Author: Mark Dickinson (mark.dickinson) *	Date: 2020-02-24 18:53
Hmm. I don't see anything here that would indicate that this is a core Python problem. This looks like something you'd need to take up with the tensorflow folks. (Investigations could conceivably turn up a CPython bug as the underlying cause, in which case a more detailed issue could be opened here, but as it stands there's not really much we can do with this.)
msg362601 - (view)	Author: nono (leo212121)	Date: 2020-02-24 19:35
Okay, I will discuss this in tensorflow forum. Thanks for providing the information.

History
Date	User	Action	Args
2022-04-11 14:59:27	admin	set	github: 83920
2020-02-24 20:50:19	mark.dickinson	set	status: open -> closed resolution: third party stage: resolved
2020-02-24 19:35:32	leo212121	set	messages: + msg362601
2020-02-24 18:53:09	mark.dickinson	set	nosy: + mark.dickinson messages: + msg362600
2020-02-24 16:30:44	leo212121	set	messages: + msg362597
2020-02-24 16:25:28	leo212121	create