classification
Title: Python crash every time opening pycharm, seems related to tensorflow
Type: crash Stage: resolved
Components: macOS Versions: Python 3.7
process
Status: closed Resolution: third party
Dependencies: Superseder:
Assigned To: Nosy List: leo212121, mark.dickinson, ned.deily, ronaldoussoren
Priority: normal Keywords:

Created on 2020-02-24 16:25 by leo212121, last changed 2020-02-24 20:50 by mark.dickinson. This issue is now closed.

Messages (3)
msg362597 - (view) Author: nono (leo212121) Date: 2020-02-24 16:30
Hey,

Whenever I try to open project in Pycharm, it will update python interpreter before the python process crashes with a SIGABRT and I get a crash window from OSX. I use homebrew with the latest packages and python 3.7.6.

Any help is appreciated. Here's the log:

Process:               Python [3240]
Path:                  /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/Resources/Python.app/Contents/MacOS/Python
Identifier:            Python
Version:               3.7.6 (3.7.6)
Code Type:             X86-64 (Native)
Parent Process:        Python [2877]
Responsible:           pycharm [2777]
User ID:               501

Date/Time:             2020-02-23 20:43:10.553 -0500
OS Version:            Mac OS X 10.15.3 (19D76)
Report Version:        12


Time Awake Since Boot: 17000 seconds
Time Since Wake:       1000 seconds

System Integrity Protection: enabled

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_CRASH (SIGABRT)
Exception Codes:       0x0000000000000000, 0x0000000000000000
Exception Note:        EXC_CORPSE_NOTIFY

Application Specific Information:
/usr/local/lib/python3.7/site-packages/tensorflow_core/compiler/tf2xla/ops/_xla_ops.so
crashed on child side of fork pre-exec

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0   libsystem_kernel.dylib        	0x00007fff656707fa __pthread_kill + 10
1   libsystem_pthread.dylib       	0x00007fff6572dbc1 pthread_kill + 432
2   libsystem_c.dylib             	0x00007fff655873a2 raise + 26
3   libsystem_platform.dylib      	0x00007fff6572242d _sigtramp + 29
4   ???                           	0x00007fff8f33a988 __c_locale + 1480
5   libsystem_c.dylib             	0x00007fff655f7a1c abort + 120
6   libtensorflow_framework.2.dylib	0x0000000122394bec tensorflow::internal::LogMessageFatal::~LogMessageFatal() + 44
7   libtensorflow_framework.2.dylib	0x0000000122394c20 tensorflow::internal::LogMessageFatal::~LogMessageFatal() + 16
8   libtensorflow_framework.2.dylib	0x0000000121c0452a tensorflow::OpRegistry::Register(std::__1::function<tensorflow::Status (tensorflow::OpRegistrationData*)> const&) + 186
9   libtensorflow_framework.2.dylib	0x0000000121c06280 tensorflow::register_op::OpDefBuilderReceiver::OpDefBuilderReceiver(tensorflow::register_op::OpDefBuilderWrapper<true> const&) + 128
10  _xla_ops.so                   	0x00000001304d6515 _GLOBAL__sub_I_xla_ops.cc + 757
11  dyld                          	0x000000010640e15d ImageLoaderMachO::doModInitFunctions(ImageLoader::LinkContext const&) + 539
12  dyld                          	0x000000010640e582 ImageLoaderMachO::doInitialization(ImageLoader::LinkContext const&) + 40
13  dyld                          	0x0000000106408dc7 ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, char const*, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 493
14  dyld                          	0x0000000106406e58 ImageLoader::processInitializers(ImageLoader::LinkContext const&, unsigned int, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 188
15  dyld                          	0x0000000106406ef8 ImageLoader::runInitializers(ImageLoader::LinkContext const&, ImageLoader::InitializerTimingList&) + 82
16  dyld                          	0x00000001063f8f87 dyld::runInitializers(ImageLoader*) + 82
17  dyld                          	0x0000000106402ad7 dlopen_internal + 609
18  libdyld.dylib                 	0x00007fff65514a7f dlopen + 171
19  org.python.python             	0x000000010399e759 _PyImport_FindSharedFuncptr + 301
20  org.python.python             	0x000000010397d5c2 _PyImport_LoadDynamicModuleWithSpec + 495
21  org.python.python             	0x000000010397d138 _imp_create_dynamic + 309
22  org.python.python             	0x00000001038d2472 _PyMethodDef_RawFastCallDict + 549
23  org.python.python             	0x00000001038d1a83 _PyCFunction_FastCallDict + 41
24  org.python.python             	0x000000010396065a _PyEval_EvalFrameDefault + 7738
25  org.python.python             	0x0000000103967b15 _PyEval_EvalCodeWithName + 1698
26  org.python.python             	0x00000001038d1d88 _PyFunction_FastCallKeywords + 212
27  org.python.python             	0x0000000103967321 call_function + 737
28  org.python.python             	0x000000010396028f _PyEval_EvalFrameDefault + 6767
29  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
30  org.python.python             	0x0000000103967321 call_function + 737
31  org.python.python             	0x0000000103960276 _PyEval_EvalFrameDefault + 6742
32  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
33  org.python.python             	0x0000000103967321 call_function + 737
34  org.python.python             	0x000000010396032a _PyEval_EvalFrameDefault + 6922
35  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
36  org.python.python             	0x0000000103967321 call_function + 737
37  org.python.python             	0x000000010396032a _PyEval_EvalFrameDefault + 6922
38  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
39  org.python.python             	0x0000000103967321 call_function + 737
40  org.python.python             	0x000000010396032a _PyEval_EvalFrameDefault + 6922
41  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
42  org.python.python             	0x00000001038d3542 object_vacall + 267
43  org.python.python             	0x00000001038d3641 _PyObject_CallMethodIdObjArgs + 168
44  org.python.python             	0x000000010397c373 PyImport_ImportModuleLevelObject + 1490
45  org.python.python             	0x000000010395b7c2 builtin___import__ + 122
46  org.python.python             	0x00000001038d2865 _PyMethodDef_RawFastCallKeywords + 537
47  org.python.python             	0x00000001038d1dc0 _PyCFunction_FastCallKeywords + 41
48  org.python.python             	0x00000001039672b4 call_function + 628
49  org.python.python             	0x000000010396032a _PyEval_EvalFrameDefault + 6922
50  org.python.python             	0x0000000103967b15 _PyEval_EvalCodeWithName + 1698
51  org.python.python             	0x00000001038d1a00 _PyFunction_FastCallDict + 444
52  org.python.python             	0x0000000103960573 _PyEval_EvalFrameDefault + 7507
53  org.python.python             	0x0000000103967b15 _PyEval_EvalCodeWithName + 1698
54  org.python.python             	0x00000001038d1a00 _PyFunction_FastCallDict + 444
55  org.python.python             	0x0000000103960573 _PyEval_EvalFrameDefault + 7507
56  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
57  org.python.python             	0x0000000103967321 call_function + 737
58  org.python.python             	0x0000000103960276 _PyEval_EvalFrameDefault + 6742
59  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
60  org.python.python             	0x0000000103967321 call_function + 737
61  org.python.python             	0x0000000103960276 _PyEval_EvalFrameDefault + 6742
62  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
63  org.python.python             	0x0000000103967321 call_function + 737
64  org.python.python             	0x0000000103960276 _PyEval_EvalFrameDefault + 6742
65  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
66  org.python.python             	0x00000001038d2b07 _PyObject_Call_Prepend + 131
67  org.python.python             	0x000000010390fe96 slot_tp_init + 80
68  org.python.python             	0x000000010390cbc2 type_call + 172
69  org.python.python             	0x00000001038d1c36 _PyObject_FastCallKeywords + 358
70  org.python.python             	0x000000010396731a call_function + 730
71  org.python.python             	0x000000010396032a _PyEval_EvalFrameDefault + 6922
72  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
73  org.python.python             	0x0000000103967321 call_function + 737
74  org.python.python             	0x000000010396028f _PyEval_EvalFrameDefault + 6767
75  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
76  org.python.python             	0x0000000103967321 call_function + 737
77  org.python.python             	0x000000010396028f _PyEval_EvalFrameDefault + 6767
78  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
79  org.python.python             	0x0000000103967321 call_function + 737
80  org.python.python             	0x0000000103960276 _PyEval_EvalFrameDefault + 6742
81  org.python.python             	0x0000000103967b15 _PyEval_EvalCodeWithName + 1698
82  org.python.python             	0x00000001038d1d88 _PyFunction_FastCallKeywords + 212
83  org.python.python             	0x0000000103967321 call_function + 737
84  org.python.python             	0x00000001039603d2 _PyEval_EvalFrameDefault + 7090
85  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
86  org.python.python             	0x0000000103967321 call_function + 737
87  org.python.python             	0x0000000103960276 _PyEval_EvalFrameDefault + 6742
88  org.python.python             	0x0000000103967b15 _PyEval_EvalCodeWithName + 1698
89  org.python.python             	0x00000001038d1d88 _PyFunction_FastCallKeywords + 212
90  org.python.python             	0x0000000103967321 call_function + 737
91  org.python.python             	0x0000000103960276 _PyEval_EvalFrameDefault + 6742
92  org.python.python             	0x0000000103967b15 _PyEval_EvalCodeWithName + 1698
93  org.python.python             	0x00000001038d1d88 _PyFunction_FastCallKeywords + 212
94  org.python.python             	0x0000000103967321 call_function + 737
95  org.python.python             	0x00000001039603d2 _PyEval_EvalFrameDefault + 7090
96  org.python.python             	0x00000001038d2194 function_code_fastcall + 106
97  org.python.python             	0x0000000103967321 call_function + 737
98  org.python.python             	0x000000010396032a _PyEval_EvalFrameDefault + 6922
99  org.python.python             	0x0000000103967b15 _PyEval_EvalCodeWithName + 1698
100 org.python.python             	0x000000010395e77d PyEval_EvalCode + 51
101 org.python.python             	0x000000010398cbc4 run_mod + 54
102 org.python.python             	0x000000010398bbf7 PyRun_FileExFlags + 160
103 org.python.python             	0x000000010398b2ae PyRun_SimpleFileExFlags + 270
104 org.python.python             	0x00000001039a3abe pymain_main + 5445
105 org.python.python             	0x00000001039a412c _Py_UnixMain + 56
106 libdyld.dylib                 	0x00007fff655297fd start + 1

Thread 1:
0   libsystem_kernel.dylib        	0x00007fff6566cce6 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fff6572e185 _pthread_cond_wait + 701
2   libopenblasp-r0.3.7.dylib     	0x000000012a3c4c3b blas_thread_server + 619
3   libsystem_pthread.dylib       	0x00007fff6572de65 _pthread_start + 148
4   libsystem_pthread.dylib       	0x00007fff6572983b thread_start + 15

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x00000001064bcdc0  rcx: 0x00007ffeec346ca8  rdx: 0x0000000000000000
  rdi: 0x0000000000000303  rsi: 0x0000000000000006  rbp: 0x00007ffeec346cd0  rsp: 0x00007ffeec346ca8
   r8: 0x0000000000000003   r9: 0xcccccccccccccccd  r10: 0x00000001064bcdc0  r11: 0x0000000000000246
  r12: 0x0000000000000303  r13: 0x0000000000000000  r14: 0x0000000000000006  r15: 0x0000000000000016
  rip: 0x00007fff656707fa  rfl: 0x0000000000000246  cr2: 0x000000012166e7c0
  
Logical CPU:     0
Error Code:      0x02000148
Trap Number:     133


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VM Region Summary:
ReadOnly portion of Libraries: Total=981.7M resident=0K(0%) swapped_out_or_unallocated=981.7M(100%)
Writable regions: Total=216.7M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=216.7M(100%)
 
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===========                     =======  ======= 
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===========                     =======  ======= 
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TOTAL, minus reserved VM space     1.2G     1281
msg362600 - (view) Author: Mark Dickinson (mark.dickinson) * (Python committer) Date: 2020-02-24 18:53
Hmm. I don't see anything here that would indicate that this is a core Python problem. This looks like something you'd need to take up with the tensorflow folks. (Investigations could conceivably turn up a CPython bug as the underlying cause, in which case a more detailed issue could be opened here, but as it stands there's not really much we can do with this.)
msg362601 - (view) Author: nono (leo212121) Date: 2020-02-24 19:35
Okay, I will discuss this in tensorflow forum. Thanks for providing the information.
History
Date User Action Args
2020-02-24 20:50:19mark.dickinsonsetstatus: open -> closed
resolution: third party
stage: resolved
2020-02-24 19:35:32leo212121setmessages: + msg362601
2020-02-24 18:53:09mark.dickinsonsetnosy: + mark.dickinson
messages: + msg362600
2020-02-24 16:30:44leo212121setmessages: + msg362597
2020-02-24 16:25:28leo212121create